Shopify + QuickBooks

Keep your orders in sync from Shopify into your QuickBooks Online accounting software.

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* No hidden fees, no credit card required.

Shopify + QuickBooks Online integration

Connect Shopify + QuickBooks

Connect Shopify and QuickBooks Online and sync sales records in minutes without having to write a single line of code.

Shopify QuickBooks integration per order daily summarised sync
Summarised or per order sync

Automatically sync each order into a single invoice or sync orders into a summarised invoice daily.

Sync Shopify payment types to QuickBooks Online
Sync payment types

Sync multiple payment types to QuickBooks Online accounts of your choice to streamline the reconciliation process.

Sync COGS from Shopify to QBO
Sync your COGS expenses

Track your Cost of Goods Sold expenses for more accurate and timely profitability reporting.

Sync refunds from Shopify to QuickBooks
Sync refunds

Sync refunds so they will appear in QuickBooks Online as credit notes.

Auto-sync schedule
Auto-sync schedule

Choose when the data should be synced and all the sales records captured.

Each order is processed through Shopify

All your transactions are captured and prepared for sync automatically.

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Sales can be grouped for easy bank reconciliation

Shopify transactions can be summarised in various of formats.

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The sync runs automatically every day

You can control what time the sync runs.

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Your sales summary is inserted in QuickBooks Online

Choose from summarised or per order sync for invoices.

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Sync is complete and ready for the next cycle

We monitor and verify to ensure 100% accurate, timely data.

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There is more to life than data entry

Automatically sync daily sales and payments totals to an invoice each day.

Get started for free

Pricing for Shopify + QBO

Get started and connect Shopify + QuickBooks Online for free. You can upgrade your plan and leverage premium features to customise your integration even further at any time.


Free forever


  • 1 Integration | 1 store
  • 1 Business tracker | 1 store
  • Unlimited orders/transactions
  • Daily sync

  • Summarised view
  • Detailed view
  • Default mapping
  • Custom mapping
  • Advanced features
  • 1 day back sync

  • 1 : 1 Onboarding on request
  • Unlimited Zoom support
  • Live chat & Help Desk

Get started for free


/month (Billed annually)

or USD 17.99 month-to-month


  • 10 Integrations | Unlimited stores
  • 10 Business trackers | Unlimited stores
  • Unlimited orders/transactions
  • Daily sync

  • Summarised view
  • Detailed view
  • Default mapping
  • Custom mapping
  • Advanced features
  • Cost of Goods (COGS) Sync
  • Up to 12 months historical back sync

  • 1 : 1 Onboarding on request
  • Unlimited Zoom support
  • Live chat & Help Desk

Unlock premium features

FAQ about integrating Shopify with QuickBooks

Yes, you can sync Shopify data with QuickBooks Online (QBO) on a daily basis. Our free integration will sync a summary of your previous day’s sales into QBO as an invoice, automatically reconcile Shopify sales and payments.
Yes! Amaka offers a free Shopify integration with QuickBooks Online accounting software. The free plan is available for 1 store and allows for an unlimited number of orders. You can view the details of our premium plan on our pricing page.
Yes! The Shopify + QuickBooks Online integration is currently available for users globally.
There are a range of options available. For the 2-Minute Express setup, the integration will automatically map sales and payments from Shopify into QuickBooks Online by creating the following default accounts. Advanced setup allows for custom mapping. You can follow the Shopify + QuickBooks setup guide or schedule a call with one of our integration experts for the Guided setup.
With the Shopify + QuickBooks integration, your sales and fees are automatically accounted for with payouts reconciliation. There’s no need to manually match up transactions. In QuickBooks Online, select Banking and then For Review. Select the Recognised filter from the dropdown and find the transaction. From the Action column, select Match so that the transaction is matched in both accounts.
Yes! Amaka’s Shopify to QuickBooks Online integration automatically syncs your COGS from by summing up all product costs for orders sold on a particular day. The sync runs daily at your selected time.
Yes! With the Shopify + QuickBooks Online integration, Shopify fees associated with each transaction are automatically accounted for. This means there are no associated errors when doing bank reconciliation. The integration automatically matches transactions to the bank feed to speed up the reconciliation process.
Yes! Any refunds or returns from Squarespace are tracked by the integration and updated in QuickBooks Online as a negative amount. This includes separate line items with any discounts and shipping fees as a negative amount as well.
You can set when the Shopify + QuickBooks integration runs a daily sync. As a default, it’s set to 3am in your local time. Additionally, you can back sync your data by up to 12 months depending on what plan you’re on. Our support team can help you with this process.
The best way to reach out to our support team is by booking a 30-minute video call support session with one of our experts. This is free regardless of whether you’re on our free or premium plan. You can also reach out to us via our live chat on the website or through our help desk.

Support for Shopify + QuickBooks integration

How to Integrate Shopify and QuickBooks Online
Setup guide

Learn how to set up the integration step-by-step in our Shopify + QuickBooks setup guide.

Help desk

If you have technical issues, our Integration Specialists are ready to help! Visit our Help Desk or book a support session.

Shopify support

For general enquiries regarding Shopify, please contact Shopify support directly.