Shopify + QuickBooks Online Integration

Keep your orders in sync from Shopify into your QuickBooks Online accounting software.

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* No hidden fees, no credit card required.

Shopify + QuickBooks Online integration

Connect Shopify + QuickBooks

Connect Shopify and QuickBooks Online and sync sales records in minutes without having to write a single line of code.

Shopify QuickBooks integration per order daily summarised sync
Summarised or per order sync

Automatically sync each order into a single invoice or sync orders into a summarised invoice daily.

Sync Shopify payment types to QuickBooks Online
Sync payment types

Sync multiple payment types to QuickBooks Online accounts of your choice to streamline the reconciliation process.

Sync COGS from Shopify to QBO
Sync your COGS expenses

Track your Cost of Goods Sold expenses for more accurate and timely profitability reporting.

Sync refunds from Shopify to QuickBooks
Sync refunds

Sync refunds so they will appear in QuickBooks Online as credit notes.

Auto-sync schedule
Auto-sync schedule

Choose when the data should be synced and all the sales records captured.

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Each order is processed through Shopify

All your transactions are captured and prepared for sync automatically.

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Sales can be grouped for easy bank reconciliation

Shopify transactions can be summarised in various of formats.

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The sync runs automatically every day

You can control what time the sync runs.

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Your sales summary is inserted in QuickBooks Online

Choose from summarised or per order sync for invoices.

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Sync is complete and ready for the next cycle

We monitor and verify to ensure 100% accurate, timely data.

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There is more to life than data entry

Automatically sync daily sales and payments totals to an invoice each day.

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The gold standard in accounting integrations

60,000+ businesses in 25+ countries around the world have synchronised over 1 billion transactions through Amaka.


Businesses and accounting professionals automating with Amaka


Over 950 5-star reviews from users across the world

1 Billion+Transactions

Sales, payments and transactional data is automatically synchronised

Pricing for Shopify + QuickBooks

Get started and connect Shopify + QuickBooks Online for free. You can upgrade your plan and leverage premium features to customise your integration even further at any time.


Free forever


  • 1 Integration | 1 store
  • 1 Business tracker | 1 store
  • Unlimited orders/transactions
  • Daily sync

  • Summarised view
  • Detailed view
  • Default mapping
  • Custom mapping
  • Advanced features
  • 1 day back sync

  • 1 : 1 Onboarding on request
  • Unlimited Zoom support
  • Live chat & Help Desk

Get started for free


/month (Billed annually)

or USD 17.99 month-to-month


  • 10 Integrations | Unlimited stores
  • 10 Business trackers | Unlimited stores
  • Unlimited orders/transactions
  • Daily sync

  • Summarised view
  • Detailed view
  • Default mapping
  • Custom mapping
  • Advanced features
  • Cost of Goods (COGS) Sync
  • Up to 12 months historical back sync

  • 1 : 1 Onboarding on request
  • Unlimited Zoom support
  • Live chat & Help Desk

Unlock premium features

FAQ about integrating Shopify with QuickBooks

Yes, you can sync Shopify data to QuickBooks Online (QBO). The first option is by using a free integration like Amaka that can sync all Shopify data (including fees, refunds, sales taxes, gift cards and more) into appropriate accounts and reconcile payout data. Data can be synced as a single invoice per order or into a summarised daily invoice.

Otherwise, you can use an app that solely syncs data but requires manual sorting and reconciliation, or, you could manually enter data from Shopify into QuickBooks. However, these options require spending multiple hours every month doing administrative work.

There are a range of features you should be on the lookout for when choosing the right Shopify + QuickBooks Online accounting integration for you. To start, the integration should be able to sync a range of transactions including sales, payments, Shopify fees, refunds, gift cards, shipping revenue and any other data points relevant to your business. Next, the integration should be able to automatically match Shopify transactions to your bank feed and streamline the payouts reconciliation process.

With the complexities of bookkeeping and accounting, a customer support team who are CPA-trained and QuickBooks-certified is absolutely essential. Furthermore, you should be able to get support around the clock and in multiple ways.

Last but definitely not least, being able to try an integration before making a large financial commitment is crucial. Amaka offers a 100% free plan for those with one location. On the Premium plan, you can access a 7-day free trial or get started on a month-to-month plan before committing to a full year.

Amaka is trusted by 60,000+ business owners and accounting professionals and has 950+ 5-star reviews. You could be saving dozens of hours on manual data entry and reconciliation while having peace of mind that your books are accurate. Sync order data, refunds, fees, sales taxes, discounts, gift cards and more.

Get started on a 100% free plan for unlimited orders if you only have one store. Otherwise, connect up to 10 stores (can be other e-commerce or POS systems) for $12.99/month to take advantage of Premium features. For example, customized mapping and 12-month historical data sync.

Finally, regardless of what plan you’re on, access 24/7 support with our CPA-trained and QuickBooks-certified team of Integration Specialists. You can choose from live chat, help desk, or a 30-minute, 1-on-1 Zoom call.

There are a range of options available. For the 2-Minute Express setup, the integration will automatically map sales and payments from Shopify into QuickBooks Online by creating the following default accounts. Advanced setup allows for custom mapping. You can follow the Shopify + QuickBooks setup guide or schedule a call with one of our integration experts for the Guided setup.
Yes! Amaka’s Shopify to QuickBooks Online integration automatically syncs your COGS from by summing up all product costs for orders sold on a particular day. The sync runs daily at your selected time.
With the Shopify + QuickBooks Online integration by Amaka, Shopify fees associated with each transaction are automatically accounted for. This means there are no associated errors when doing bank reconciliation. The integration automatically matches transactions to the bank feed to speed up the reconciliation process.
Any refunds or returns from Shopify are tracked by the integration and updated in QuickBooks Online as a negative amount. This includes separate line items with any discounts and shipping fees as a negative amount as well.
You can set when the Shopify + QuickBooks integration runs a daily sync. As a default, it’s set to 3am in your local time. Additionally, you can back sync your data by up to 12 months depending on what plan you’re on. Our support team can help you with this process.
The best way to reach out to our support team is by booking a 30-minute video call support session with one of our CPA-trained and QuickBooks-certified Integration Specialists. This is free regardless of whether you’re on our free or premium plan. You can also reach out to us via our live chat on the website or through our help desk.

Support for Shopify + QuickBooks integration

How to Connect Shopify and QuickBooks Online
Setup guide

Learn how to set up the integration step-by-step in our Shopify + QuickBooks setup guide.

Support for Shopify and QuickBooks Online integration
Help desk

If you have technical issues, our Integration Specialists are ready to help! Visit our Help Desk or book a support session.

How to get help for Shopify
Shopify support

For general enquiries regarding Shopify, please contact Shopify support directly.